Showing posts with label Zotero. Show all posts
Showing posts with label Zotero. Show all posts

Practical model for using the Information Processing Theory to stay current with (medical) literature

The Information Processing Theory compares the human brain to a computer and suggests that just like we can make a computer work better by changing the processor, motherboard or RAM and the programming, the human can also become more sophisticated thinkers with appropriate strategies, sensory inputs and rules.

While I don't know how well validated this theory is, it does describe an interesting flow of information from the sensory register to short term memory to long term memory.
The wikipedia describes it thus

Sensory register: the mental processing unit that receives information from the environment and stores it fleetingly.
Short-term memory: the mental processing unit in which information may be stored temporarily; the work space of the mind, where a decision must be made to discard information or to transfer it to permanent storage, in long-term memory.
Long-term memory: the encyclopedic mental processing unit in which information may be stored permanently and from which it may be later retrieved.

The way I understand it, Constructivism works great for understanding how we can facilitate learning of new concepts e.g. medical students learning anatomy in their first year. Active learning, Problem based small group discussions, etc.

When we think about how to help a practicing physician keep up with medical updates in his or her specialty, it is a different setting. The person already knows the subject, is busy and probably does not have much time for collaborative learning in small groups. The constructs have already been formed during medical school, residency and subsequent experiences. It seems self directed learning using the principles of the Information Processing Theory would very helpful to help the physician refine these constructs on a longitudinal basis. Let me show you a model of how this would work.

Software needed:

  1. Google Reader This is a free web application and all it requires is a free Google account.
  2. Zotero I have referred to Zotero in a previous post. It is a free bibliography and citation tool that works as an add on to Firefox.
Screen shots of the Model:

Overview of Google Reader



Google Reader Detail:



Zotero Overview:


Zotero Details:


Retrieval from Zotero:

Steps in the Model:

  1. Set up RSS subscriptions to your specialty medical journals in Google Reader
  2. This allows abstracts of articles flow into your Reader automatically and allows you to view these in one place
  3. This is equivalent to the sensory register mentioned above. When you browse through the RSS feeds, you "receive the information from the environment and store it fleetingly"
  4. As you scan through the abstracts, you can in Google Reader mark the ones that seem significant and relevant with a star. The Google Reader automatically tracks the ones you have browsed and removes them from the "home screen".
  5. You have thus gone through the process of determining whether the abstracts are to be discarded or to be processed for storage in long term memory. This is similar to the short term memory proposed in the Information Processing Theory.
  6. When you have more time and inclination, you return to the Google Reader using Firefox that has the Zotero plug-in installed.
  7. You click on the hyperlink to the abstract and from there to the full text article if you have access. You read the abstract and determine that it is worth "storing". Zotero allows you to take a "Snapshot" of the article and annotate it with notes, keywords and highlights. The bibiliography information of the article along with the annotated snapshot and notes and keywords are all stored in your Zotero library
  8. Zotero allows each reference item to be included in several collections. Thus as an Internist, I have collections for all subspecialties of medicine - e.g. Cardiology, Pulmonary etc.
  9. This process of analysing the article, annotating it and adding keywords, notes and sorting into collections is similiar to encoding that is described in Constructivism and helps move the information into a more permanent long-term storage.
  10. The entire Zotero library is searchable and allows for easy retreival of previously processed information. As information is recalled and applied more often, it is more likely to become true knowledge.
Try it out, you have nothing to lose and possibly a lot to gain!


Using Zotero in an ePortfolio

Zotero has become one of the most popular Reference management and bibliography tools. Created by the Center for History and New Media at George Mason University with funding from the US Institute of Museum and Library Services, Andrew W. Mellon Foundation and Alfred P. Sloan Foundation. It is an extension (add-on) for Firefox and is free.
Zotero is among the many excellent applications developed by the Center. The appear to have some very creative minds and an excellent team of designers, user interface experts and programmers along with some strong funding.

Zotero is in some ways like other reference managers:
  1. Allows one to build up a library of references along with specific information like Author names, dates, journal name, pages etc...
  2. Has a Word (and Open Office) plug in to insert citations into articles you write and to create a bibliography of the citations you use at the end of the article.
  3. Has multiple styles for citations and bibliographies that you can use based on which journal you are sending your manuscript to.
Zotero is different from out reference managers too:
  1. It is free
  2. It is an extension of a browser - this feature means Zotero understands that most databases of information are now online and people use a browser to search these databases. Even if you do want to add an article from a print journal into your library, you could still go to the appropriate database where this journal is indexed and find that article.
  3. Adding the article's appropriate information to your library is often seamless. A large number of these online databases (e.g. PubMed) are now Zotero ready. What this means is that when the browser opens a web page with information re' say a journal article, Zotero "senses" this and a small icon appears to the right of the URL box. Clicking on this icon adds all the metadata about that article into the appropriate fields in the Zotero Library.
  4. Zotero allows you to tag the article with keywords and also to add it to various "Collections". It also has a powerful search tool to search for through your references.
  5. Zotero allows you to get a "snapshot" of the webpage and annotate your copy of this snapshot (much like highlighting or commenting in a PDF file).
  6. Zotero also allows you to add your notes to the reference.
There are numerous features like this and Zotero is under constant development and new versions are being released regularly with additional features. Zotero user forums help to gather ideas and suggestions from the users and are regularly monitored by the development team. So is Zotero PERFECT?

I have one specific problem when using Zotero for a specific purpose. I am working with a couple of medical students to use Zotero for their ePortfolios. We have a home-grown ePortfolio system where all medical students get narrative formative and summative feedback through out their 5 years. These assessments are competency based (similar to ACGME competencies) and organized into areas of improvement and areas of strength. These are all done online and when submitted, they appear in the students' ePortfolio workspaces. The students write essays (ePortfolios) regarding their meeting various standards in each competency citing the evidence from the assessments.

We use EndNote or RefWorks to allow students to download all their references (assessment information), write their essays, cite the references, and then upload it all into a review area. The citations work as hyperlinks so when reviewer reading the essay wants to look at one of the cited references s/he has to just click on the citation to open a new window where the assessment form is displayed.

The problem I am facing with Zotero is that we cannot figure out how to make the citations in the text of the essay or in the bibliography clickable without going to each one and editing them. Since some of the students have as many as a 100 references in their bibliography this is not a viable solution.

It is very surprising that though Zotero is built on the philosophy of getting the references from online databases, it seems to have neglected that the manuscripts written by people using Zotero would be reviewed online where it would be critical for these citations to be hyperlinks!

I am relatively new to Zotero and am quite possibly missing something. I have scoured the Zotero forums, Googled the web and found nothing so far. Maybe the CSL does not at present allow this to occur? Would it be possible to add a "Web style" to Zotero's growing list of styles? If someone can do that, it will be the most appreciated!